IL_7NSO_069

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7NSO|1|A|A|1801, 7NSO|1|A|C|1816, 7NSO|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSO_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0716

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7NSO|1|A|U|1798
7NSO|1|A|G|1799
7NSO|1|A|C|1800
7NSO|1|A|A|1801
7NSO|1|A|A|1802
7NSO|1|A|A|1803
7NSO|1|A|C|1804
*
7NSO|1|A|G|1813
7NSO|1|A|G|1814
7NSO|1|A|A|1815
7NSO|1|A|C|1816
7NSO|1|A|G|1817
7NSO|1|A|U|1818
7NSO|1|A|A|1819
7NSO|1|A|U|1820
7NSO|1|A|A|1821

Current chains

Chain A

23S rRNA (2903-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA