IL_7NSO_172

3D structure

PDB id

7NSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NSO_172 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1015

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7NSO|1|a|C|1303
7NSO|1|a|G|1304
7NSO|1|a|G|1305
7NSO|1|a|A|1306
7NSO|1|a|U|1307
7NSO|1|a|U|1308
*
7NSO|1|a|A|1329
7NSO|1|a|U|1330
7NSO|1|a|G|1331
7NSO|1|a|A|1332
7NSO|1|a|A|1333
7NSO|1|a|G|1334

Current chains

Chain a

16S rRNA (1540-MER)

Nearby chains

Chain m

30S ribosomal protein S13