IL_7NWG_041

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUC*GCCCGG

Length

10 nucleotides

Bulged bases

7NWG|1|51|C|1214, 7NWG|1|51|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_041 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3028

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7NWG|1|51|C|1081
7NWG|1|51|C|1082
7NWG|1|51|U|1083
7NWG|1|51|C|1084
*
7NWG|1|51|G|1213
7NWG|1|51|C|1214
7NWG|1|51|C|1215
7NWG|1|51|C|1216
7NWG|1|51|G|1217
7NWG|1|51|G|1218

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain F3

uL30

Chain b3

eL29