3D structure

PDB id
7NWG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UAA*UA
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NWG_045 not in the Motif Atlas
Geometric match to IL_5J7L_032
Geometric discrepancy: 0.1978
The information below is about IL_5J7L_032
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

7NWG|1|51|U|1341
7NWG|1|51|A|1342
7NWG|1|51|A|1343
*
7NWG|1|51|U|1514
7NWG|1|51|A|1515

Current chains

Chain 51
28S Ribosomal RNA

Nearby chains

Chain C3
uL4
Chain L3
L13
Chain N3
Ribosomal protein L15
Chain Q3
L18
Chain a3
uL15

Coloring options:


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