IL_7NWG_046

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_046 not in the Motif Atlas

Geometric match to IL_5J7L_044

Geometric discrepancy: 0.2022

The information below is about IL_5J7L_044

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7NWG|1|51|A|1343
7NWG|1|51|C|1344
*
7NWG|1|51|G|1512
7NWG|1|51|U|1513
7NWG|1|51|U|1514

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

L13

Chain N3

Ribosomal protein L15

Chain Q3

L18

Chain a3

uL15