IL_7NWG_064

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAGU*AUGC

Length

9 nucleotides

Bulged bases

7NWG|1|51|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_064 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3904

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7NWG|1|51|G|1721
7NWG|1|51|C|1722
7NWG|1|51|A|1723
7NWG|1|51|G|1724
7NWG|1|51|U|1725
*
7NWG|1|51|A|1838
7NWG|1|51|U|1839
7NWG|1|51|G|1840
7NWG|1|51|C|1841

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain F3

uL30

Chain T3

eL21

Chain b3

eL29