IL_7NWG_085

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7NWG|1|51|G|2544, 7NWG|1|51|U|2545, 7NWG|1|51|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_085 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.3969

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7NWG|1|51|G|2542
7NWG|1|51|A|2543
7NWG|1|51|G|2544
7NWG|1|51|U|2545
7NWG|1|51|G|2546
7NWG|1|51|G|2547
*
7NWG|1|51|C|2772
7NWG|1|51|G|2773
7NWG|1|51|C|2774

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain k3

L38