IL_7NWG_092

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_092 not in the Motif Atlas

Geometric match to IL_7A0S_060

Geometric discrepancy: 0.205

The information below is about IL_7A0S_060

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

7NWG|1|51|A|2844
7NWG|1|51|A|2845
7NWG|1|51|G|2846
*
7NWG|1|51|C|3842
7NWG|1|51|C|3843
7NWG|1|51|U|3844

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

eL14

Chain W

60S ribosomal protein L24-like protein