IL_7NWG_094

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7NWG|1|51|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_094 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.159

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7NWG|1|51|C|2867
7NWG|1|51|G|2868
7NWG|1|51|U|2869
7NWG|1|51|A|2870
7NWG|1|51|A|2871
7NWG|1|51|C|2872
*
7NWG|1|51|G|2877
7NWG|1|51|G|2878
7NWG|1|51|A|2879
7NWG|1|51|U|2880
7NWG|1|51|A|2881
7NWG|1|51|A|2882
7NWG|1|51|G|2883

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain n3

60s ribosomal protein l41

Chain p3

ribosomal protein eL43