IL_7NWG_097

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCC*GAGA

Length

7 nucleotides

Bulged bases

7NWG|1|51|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_097 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.2733

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7NWG|1|51|U|3631
7NWG|1|51|C|3632
7NWG|1|51|C|3633
*
7NWG|1|51|G|3827
7NWG|1|51|A|3828
7NWG|1|51|G|3829
7NWG|1|51|A|3830

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain n3

60s ribosomal protein l41