IL_7NWG_117

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_117 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.2121

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7NWG|1|51|G|4400
7NWG|1|51|G|4401
7NWG|1|51|C|4402
7NWG|1|51|U|4403
*
7NWG|1|51|G|4440
7NWG|1|51|A|4441
7NWG|1|51|U|4442
7NWG|1|51|C|4443
7NWG|1|51|C|4444

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain b3

eL29

Chain q3

Transfer RNA; tRNA