IL_7NWG_125

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUC*GACAG

Length

9 nucleotides

Bulged bases

7NWG|1|51|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_125 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3503

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7NWG|1|51|C|4537
7NWG|1|51|G|4538
7NWG|1|51|U|4539
7NWG|1|51|C|4540
*
7NWG|1|51|G|4545
7NWG|1|51|A|4546
7NWG|1|51|C|4547
7NWG|1|51|A|4548
7NWG|1|51|G|4549

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain A3

L8

Chain q3

Transfer RNA; tRNA