IL_7NWG_141

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_141 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.265

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7NWG|1|51|U|4972
7NWG|1|51|U|4973
7NWG|1|51|C|4974
7NWG|1|51|G|4975
*
7NWG|1|51|C|4983
7NWG|1|51|C|4984
7NWG|1|51|U|4985
7NWG|1|51|G|4986

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22

Chain d3

eL31