IL_7NWG_142

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGUC*GACAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_142 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3601

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7NWG|1|51|G|4992
7NWG|1|51|G|4993
7NWG|1|51|G|4994
7NWG|1|51|U|4995
7NWG|1|51|C|4996
*
7NWG|1|51|G|5055
7NWG|1|51|A|5056
7NWG|1|51|C|5057
7NWG|1|51|A|5058
7NWG|1|51|C|5059

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31