IL_7NWG_147

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_147 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2333

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7NWG|1|51|A|5014
7NWG|1|51|G|5015
7NWG|1|51|A|5016
7NWG|1|51|G|5017
*
7NWG|1|51|C|5032
7NWG|1|51|G|5033
7NWG|1|51|A|5034
7NWG|1|51|U|5035

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain J2

40S ribosomal protein S8

Chain R3

60S ribosomal protein L19