IL_7NWG_168

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_168 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3021

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7NWG|1|A2|U|152
7NWG|1|A2|G|153
7NWG|1|A2|U|154
7NWG|1|A2|G|155
*
7NWG|1|A2|U|163
7NWG|1|A2|A|164
7NWG|1|A2|G|165
7NWG|1|A2|A|166

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain Z2

40S ribosomal protein S24