IL_7NWG_174

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CCGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_174 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3431

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7NWG|1|A2|C|409
7NWG|1|A2|G|410
7NWG|1|A2|G|411
*
7NWG|1|A2|C|429
7NWG|1|A2|C|430
7NWG|1|A2|G|431
7NWG|1|A2|G|432

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain F2

S4

Chain J2

40S ribosomal protein S8

Chain K2

40S ribosomal protein S9