IL_7NWG_187
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_187 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3787
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
7NWG|1|A2|U|801
7NWG|1|A2|A|802
7NWG|1|A2|C|803
*
7NWG|1|A2|G|860
7NWG|1|A2|A|861
7NWG|1|A2|A|862
7NWG|1|A2|U|863
7NWG|1|A2|A|864
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain I2
- ribosomal protein eS7
- Chain M2
- 40S ribosomal protein S11
- Chain X2
- Ribosomal protein S15a
- Chain Y2
- Ribosomal protein S23
Coloring options: