IL_7NWG_201

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_201 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1522

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7NWG|1|A2|G|1168
7NWG|1|A2|G|1169
7NWG|1|A2|A|1170
7NWG|1|A2|G|1171
7NWG|1|A2|U|1172
7NWG|1|A2|A|1173
7NWG|1|A2|U|1174
7NWG|1|A2|G|1175
*
7NWG|1|A2|U|1186
7NWG|1|A2|G|1187
7NWG|1|A2|A|1188
7NWG|1|A2|A|1189
7NWG|1|A2|A|1190
7NWG|1|A2|C|1191

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain Y2

Ribosomal protein S23

Chain n3

60s ribosomal protein l41