IL_7NWG_203

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAA*UUU

Length

7 nucleotides

Bulged bases

7NWG|1|A2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_203 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.2313

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7NWG|1|A2|G|1206
7NWG|1|A2|G|1207
7NWG|1|A2|A|1208
7NWG|1|A2|A|1209
*
7NWG|1|A2|U|1690
7NWG|1|A2|U|1691
7NWG|1|A2|U|1692

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain b2

40S ribosomal protein S26

Chain v3

mRNA