IL_7NWG_208

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_208 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2516

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7NWG|1|A2|C|1268
7NWG|1|A2|G|1269
*
7NWG|1|A2|C|1513
7NWG|1|A2|G|1514
7NWG|1|A2|G|1515

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain L2

40S ribosomal protein S10

Chain Q2

40S ribosomal protein uS19

Chain e2

uS14

Chain g2

eS31