IL_7NWG_213

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_213 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.2156

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7NWG|1|A2|U|1347
7NWG|1|A2|G|1348
7NWG|1|A2|G|1349
*
7NWG|1|A2|C|1380
7NWG|1|A2|G|1381
7NWG|1|A2|A|1382

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain B2

40S ribosomal protein SA

Chain D2

40S ribosomal protein S2

Chain E2

40S ribosomal protein S3

Chain S2

40S ribosomal protein S17