IL_7NWG_215

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

7NWG|1|A2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_215 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3726

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7NWG|1|A2|C|1395
7NWG|1|A2|A|1396
7NWG|1|A2|U|1397
7NWG|1|A2|G|1398
7NWG|1|A2|C|1399
*
7NWG|1|A2|G|1447
7NWG|1|A2|A|1448
7NWG|1|A2|G|1449
7NWG|1|A2|G|1450

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain R2

Ribosomal protein S16

Chain S2

40S ribosomal protein S17

Chain V2

40S ribosomal protein S20

Chain h2

ribosomal protein RACK1