IL_7NWG_221
3D structure
- PDB id
- 7NWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWG_221 not in the Motif Atlas
- Homologous match to IL_4V88_464
- Geometric discrepancy: 0.1961
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NWG|1|A2|G|1702
7NWG|1|A2|C|1703
7NWG|1|A2|C|1704
7NWG|1|A2|C|1705
*
7NWG|1|A2|G|1829
7NWG|1|A2|U|1830
7NWG|1|A2|A|1831
7NWG|1|A2|A|1832
7NWG|1|A2|C|1833
Current chains
- Chain A2
- 18S Ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain n3
- 60s ribosomal protein l41
- Chain v3
- mRNA
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