IL_7NWG_304

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_304 not in the Motif Atlas

Homologous match to IL_9H3G_240

Geometric discrepancy: 0.5404

The information below is about IL_9H3G_240

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

7NWG|1|A2|U|1729
7NWG|1|A2|U|1730
7NWG|1|A2|A|1731
7NWG|1|A2|G|1732
*
7NWG|1|A2|C|1802
7NWG|1|A2|U|1803
7NWG|1|A2|U|1804
7NWG|1|A2|G|1805

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain J2

40S ribosomal protein S8

Chain V3

eL14