IL_7NWG_318

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7NWG|1|51|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_318 not in the Motif Atlas

Homologous match to IL_8GLP_099

Geometric discrepancy: 0.2909

The information below is about IL_8GLP_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.5

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7NWG|1|51|C|2646
7NWG|1|51|A|2647
7NWG|1|51|G|2648
*
7NWG|1|51|C|2685
7NWG|1|51|G|2686
7NWG|1|51|U|2687
7NWG|1|51|G|2688

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain g3

60S ribosomal protein L34