IL_7NWG_334

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7NWG|1|A2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWG_334 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.2537

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7NWG|1|A2|G|952
7NWG|1|A2|C|953
7NWG|1|A2|U|954
7NWG|1|A2|A|955
7NWG|1|A2|G|956
*
7NWG|1|A2|C|967
7NWG|1|A2|U|968
7NWG|1|A2|U|969
7NWG|1|A2|G|970
7NWG|1|A2|G|971
7NWG|1|A2|A|972
7NWG|1|A2|C|973
7NWG|1|A2|C|974

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain C2

40S ribosomal protein S3a

Chain P2

uS11