IL_7NWH_013

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

7NWH|1|5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_013 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.2425

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7NWH|1|5|C|339
7NWH|1|5|C|340
7NWH|1|5|G|341
7NWH|1|5|G|342
*
7NWH|1|8|C|32
7NWH|1|8|G|33

Current chains

Chain 5

28S Ribosomal RNA

Chain 8

5.8S Ribosomal RNA

Nearby chains

Chain C

uL4

Chain L

60S ribosomal protein L13

Chain j

Ribosomal protein L37