IL_7NWH_135

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACAUUU*ACCAU

Length

11 nucleotides

Bulged bases

7NWH|1|5|C|4670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_135 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.3072

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7NWH|1|5|A|4624
7NWH|1|5|C|4625
7NWH|1|5|A|4626
7NWH|1|5|U|4627
7NWH|1|5|U|4628
7NWH|1|5|U|4629
*
7NWH|1|5|A|4669
7NWH|1|5|C|4670
7NWH|1|5|C|4671
7NWH|1|5|A|4672
7NWH|1|5|U|4673

Current chains

Chain 5

28S Ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

eL14

Chain W

60S ribosomal protein L24-like protein