IL_7NWH_196

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7NWH|1|9|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_196 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.2042

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7NWH|1|9|G|665
7NWH|1|9|U|666
7NWH|1|9|U|667
7NWH|1|9|A|668
7NWH|1|9|A|669
7NWH|1|9|A|670
7NWH|1|9|A|671
*
7NWH|1|9|U|1161
7NWH|1|9|C|1162

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain XX

40S ribosomal protein uS12

Chain aa

40S ribosomal protein S26