IL_7NWH_198
3D structure
- PDB id
- 7NWH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWH_198 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.2314
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7NWH|1|9|C|676
7NWH|1|9|G|677
7NWH|1|9|U|678
7NWH|1|9|A|679
7NWH|1|9|G|680
*
7NWH|1|9|U|1025
7NWH|1|9|C|1026
7NWH|1|9|A|1027
7NWH|1|9|A|1028
7NWH|1|9|G|1029
Current chains
- Chain 9
- 18S Ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- ribosomal protein uS15
- Chain WW
- Ribosomal protein S15a
- Chain XX
- 40S ribosomal protein uS12
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