IL_7NWH_207

3D structure

PDB id

7NWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWH_207 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2749

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7NWH|1|9|C|876
7NWH|1|9|C|877
7NWH|1|9|G|878
7NWH|1|9|C|879
*
7NWH|1|9|G|907
7NWH|1|9|A|908
7NWH|1|9|G|909
7NWH|1|9|G|910

Current chains

Chain 9

18S Ribosomal RNA

Nearby chains

Chain HH

S7

Chain R

60S ribosomal protein L19