IL_7NWI_007
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_007 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1325
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7NWI|1|5|C|81
7NWI|1|5|U|82
7NWI|1|5|C|83
7NWI|1|5|A|84
7NWI|1|5|G|85
7NWI|1|5|U|86
7NWI|1|5|A|87
7NWI|1|5|A|88
*
7NWI|1|5|U|96
7NWI|1|5|G|97
7NWI|1|5|A|98
7NWI|1|5|A|99
7NWI|1|5|C|100
7NWI|1|5|A|101
7NWI|1|5|G|102
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain L
- L13
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal_L18e/L15P domain-containing protein
- Chain a
- uL15
Coloring options: