IL_7NWI_030

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

7NWI|1|5|C|501, 7NWI|1|5|C|502, 7NWI|1|5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_030 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.268

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7NWI|1|5|G|500
7NWI|1|5|C|501
7NWI|1|5|C|502
7NWI|1|5|C|503
7NWI|1|5|G|504
7NWI|1|5|G|505
*
7NWI|1|5|U|653
7NWI|1|5|C|654

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

Ribosomal_L18e/L15P domain-containing protein