IL_7NWI_147
3D structure
- PDB id
- 7NWI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NWI_147 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1429
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7NWI|1|5|C|4596
7NWI|1|5|U|4597
7NWI|1|5|C|4598
7NWI|1|5|A|4599
7NWI|1|5|G|4600
7NWI|1|5|U|4601
7NWI|1|5|A|4602
7NWI|1|5|C|4603
*
7NWI|1|5|G|4608
7NWI|1|5|G|4609
7NWI|1|5|A|4610
7NWI|1|5|A|4611
7NWI|1|5|C|4612
7NWI|1|5|C|4613
7NWI|1|5|G|4614
Current chains
- Chain 5
- 28S ribosomal RNA+BlaS
Nearby chains
- Chain B
- uL3
- Chain H
- L9
- Chain V
- eL14
- Chain m
- 60S ribosomal protein L40
Coloring options: