IL_7NWI_162

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

7NWI|1|5|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_162 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.2533

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7NWI|1|5|G|5000
7NWI|1|5|U|5001
7NWI|1|5|U|5002
*
7NWI|1|5|G|5045
7NWI|1|5|U|5046
7NWI|1|5|C|5047
7NWI|1|5|A|5048
7NWI|1|5|G|5049
7NWI|1|5|C|5050

Current chains

Chain 5

28S ribosomal RNA+BlaS

Nearby chains

Chain B

uL3

Chain d

eL31