IL_7NWI_218

3D structure

PDB id

7NWI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7NWI|1|9|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWI_218 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1566

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7NWI|1|9|C|931
7NWI|1|9|G|932
7NWI|1|9|G|933
7NWI|1|9|G|934
7NWI|1|9|G|935
*
7NWI|1|9|C|1007
7NWI|1|9|A|1008
7NWI|1|9|A|1009
7NWI|1|9|G|1010

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

ribosomal protein uS15

Chain aa

40S ribosomal protein S26