IL_7NWT_040

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

7NWT|1|1|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_040 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2521

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7NWT|1|1|G|1059
7NWT|1|1|U|1060
7NWT|1|1|U|1061
7NWT|1|1|G|1062
*
7NWT|1|1|C|1076
7NWT|1|1|A|1077
7NWT|1|1|U|1078
7NWT|1|1|C|1079

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11