IL_7NWT_069

3D structure

PDB id

7NWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7NWT|1|1|A|1801, 7NWT|1|1|C|1816, 7NWT|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NWT_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0544

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7NWT|1|1|U|1798
7NWT|1|1|G|1799
7NWT|1|1|C|1800
7NWT|1|1|A|1801
7NWT|1|1|A|1802
7NWT|1|1|A|1803
7NWT|1|1|C|1804
*
7NWT|1|1|G|1813
7NWT|1|1|G|1814
7NWT|1|1|A|1815
7NWT|1|1|C|1816
7NWT|1|1|G|1817
7NWT|1|1|U|1818
7NWT|1|1|A|1819
7NWT|1|1|U|1820
7NWT|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2