3D structure

PDB id
7O1A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
7O1A|1|AA|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O1A_031 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0929
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7O1A|1|AA|U|605
7O1A|1|AA|G|606
7O1A|1|AA|A|607
7O1A|1|AA|A|608
7O1A|1|AA|A|609
7O1A|1|AA|U|610
7O1A|1|AA|C|611
7O1A|1|AA|C|612
*
7O1A|1|AA|G|628
7O1A|1|AA|A|629
7O1A|1|AA|A|630
7O1A|1|AA|C|631
7O1A|1|AA|U|632
7O1A|1|AA|G|633

Current chains

Chain AA
Ribosomal RNA 16S

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AH
30S ribosomal protein S8
Chain AP
30S ribosomal protein S16

Coloring options:


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