IL_7O5B_051

3D structure

PDB id

7O5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCAG*CCAAUC

Length

10 nucleotides

Bulged bases

7O5B|1|A|A|1266, 7O5B|1|A|A|1289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5B_051 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2554

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7O5B|1|A|G|1264
7O5B|1|A|C|1265
7O5B|1|A|A|1266
7O5B|1|A|G|1267
*
7O5B|1|A|C|1286
7O5B|1|A|C|1287
7O5B|1|A|A|1288
7O5B|1|A|A|1289
7O5B|1|A|U|1290
7O5B|1|A|C|1291

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14