IL_7O5B_189
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 7O5B|1|X|U|2718, 7O5B|1|X|A|2719
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_189 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.1118
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
7O5B|1|X|U|2716
7O5B|1|X|G|2717
7O5B|1|X|U|2718
7O5B|1|X|A|2719
7O5B|1|X|C|2720
*
7O5B|1|X|G|2747
7O5B|1|X|G|2748
7O5B|1|X|U|2749
7O5B|1|X|A|2750
7O5B|1|X|G|2751
Current chains
- Chain X
- 23S rRNA (2887-MER)
Nearby chains
- Chain a
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L17
- Chain m
- 50S ribosomal protein L19
Coloring options: