IL_7O5B_199
3D structure
- PDB id
- 7O5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O5B_199 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.3707
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7O5B|1|Y|C|69
7O5B|1|Y|G|70
7O5B|1|Y|A|71
7O5B|1|Y|U|72
7O5B|1|Y|G|73
7O5B|1|Y|G|74
7O5B|1|Y|U|75
7O5B|1|Y|A|76
7O5B|1|Y|G|77
*
7O5B|1|Y|U|95
7O5B|1|Y|G|96
7O5B|1|Y|A|97
7O5B|1|Y|G|98
7O5B|1|Y|A|99
7O5B|1|Y|G|100
7O5B|1|Y|U|101
7O5B|1|Y|A|102
7O5B|1|Y|G|103
Current chains
- Chain Y
- 5S rRNA (112-MER)
Nearby chains
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
Coloring options: