IL_7O5H_025

3D structure

PDB id

7O5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal methyltransferase KsgA bound to small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7O5H|1|A|A|532, 7O5H|1|A|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O5H_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1556

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7O5H|1|A|G|515
7O5H|1|A|U|516
7O5H|1|A|G|517
7O5H|1|A|C|518
7O5H|1|A|C|519
7O5H|1|A|A|520
7O5H|1|A|G|521
*
7O5H|1|A|C|528
7O5H|1|A|G|529
7O5H|1|A|G|530
7O5H|1|A|U|531
7O5H|1|A|A|532
7O5H|1|A|A|533
7O5H|1|A|U|534
7O5H|1|A|A|535
7O5H|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12