IL_7O7Y_020
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7O7Y|1|A2|U|362, 7O7Y|1|A2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_020 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.0677
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7O7Y|1|A2|U|360
7O7Y|1|A2|A|361
7O7Y|1|A2|U|362
7O7Y|1|A2|C|363
7O7Y|1|A2|A|364
7O7Y|1|A2|A|365
*
7O7Y|1|A2|U|397
7O7Y|1|A2|G|398
7O7Y|1|A2|A|399
7O7Y|1|A2|C|400
7O7Y|1|A2|C|401
7O7Y|1|A2|A|402
7O7Y|1|A2|C|403
7O7Y|1|A2|G|404
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ah
- 40S ribosomal protein S8
- Chain Ak
- 40S ribosomal protein S11
- Chain Aw
- 40S ribosomal protein S23
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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