IL_7O7Y_032

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

7O7Y|1|A2|A|629

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_032 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1813

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7O7Y|1|A2|G|612
7O7Y|1|A2|U|613
7O7Y|1|A2|G|614
7O7Y|1|A2|C|615
7O7Y|1|A2|C|616
7O7Y|1|A2|A|617
7O7Y|1|A2|G|618
*
7O7Y|1|A2|C|625
7O7Y|1|A2|G|626
7O7Y|1|A2|G|627
7O7Y|1|A2|OMU|628
7O7Y|1|A2|A|629
7O7Y|1|A2|A|630
7O7Y|1|A2|U|631
7O7Y|1|A2|U|632
7O7Y|1|A2|C|633

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ac

40S ribosomal protein S3

Chain Aw

40S ribosomal protein S23