IL_7O7Y_179
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 7O7Y|1|B5|U|1869, 7O7Y|1|B5|C|1870, 7O7Y|1|B5|G|1994, 7O7Y|1|B5|A|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Y_179 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.2316
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7O7Y|1|B5|C|1865
7O7Y|1|B5|U|1866
7O7Y|1|B5|C|1867
7O7Y|1|B5|A|1868
7O7Y|1|B5|U|1869
7O7Y|1|B5|C|1870
7O7Y|1|B5|A|1871
7O7Y|1|B5|G|1872
*
7O7Y|1|B5|C|1992
7O7Y|1|B5|U|1993
7O7Y|1|B5|G|1994
7O7Y|1|B5|G|1995
7O7Y|1|B5|A|1996
7O7Y|1|B5|G|1997
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BH
- 60S ribosomal protein L9
- Chain BM
- Ribosomal protein L14
- Chain BO
- Ribosomal protein uL13
- Chain BS
- Ribosomal protein eL20
- Chain Bm
- 60S ribosomal protein L40
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