IL_7O7Y_266

3D structure

PDB id

7O7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

7O7Y|1|B5|U|4380

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Y_266 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3005

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7O7Y|1|B5|U|4378
7O7Y|1|B5|G|4379
7O7Y|1|B5|U|4380
7O7Y|1|B5|A|4381
7O7Y|1|B5|PSU|4382
7O7Y|1|B5|OMG|4383
7O7Y|1|B5|U|4384
*
7O7Y|1|B5|G|4407
7O7Y|1|B5|C|4408
7O7Y|1|B5|G|4409
7O7Y|1|B5|A|4410
7O7Y|1|B5|A|4411
7O7Y|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

eL24

Chain Bd

eL31