IL_7O7Z_010

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_010 not in the Motif Atlas

Geometric match to IL_1N33_070

Geometric discrepancy: 0.2078

The information below is about IL_1N33_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7O7Z|1|A2|U|110
7O7Z|1|A2|A|111
7O7Z|1|A2|U|112
*
7O7Z|1|A2|A|350
7O7Z|1|A2|C|351
7O7Z|1|A2|G|352

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11