IL_7O7Z_011

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

7O7Z|1|A2|G|113, 7O7Z|1|A2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_011 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1393

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7O7Z|1|A2|U|112
7O7Z|1|A2|G|113
7O7Z|1|A2|G|114
7O7Z|1|A2|U|115
*
7O7Z|1|A2|A|349
7O7Z|1|A2|A|350

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11